| 1950 | Lamentations of the Prophet Jeremiah / De Profundis Clamari Ad Te - Ave Maria | Orlando Lassus, Josquin des Pres; The Dessoff Choirs & Paul Boepple | | 1 |
| 1958 | Josquin Des Préz: Missa Pange Lingua, motets and instrumental pieces | Josquin des Prez; The New York Pro Musica Antiqua | | 2 |
| 1960 | Missa Pange Lingua / 8 Weltlische Werke | Josquin des Prez; Pro Musica Antiqua, Safford Cape | | 1 |
| 1971 | Missa Pange Lingua, Requiem Missa Pro Defunctis | Josquin des Prez, Pierre de la Rue; Spandauer Kantorei, Martin Behrmann | | 1 |
| 1977 | Missa "L'Homme Armé" | Josquin Desprez; Pro Cantione Antiqua, London | | 1 |
| 1985 | Desprez: Missa «L’Homme arme» / Ockeghem: Requiem | Desprez, Ockeghem; Pro Cantione Antiqua, London, Bruno Turner | | 1 |
| 1986 | De la Rue: Requiem / Des Prez: Mass "Hercules Dux Ferrariae" / Deploration | Pierre de la Rue, Josquin des Prez; New London Chamber Choir, James Wood | | 3 |
| 1986 | Missa Pange Lingua | Josquin des Prez; Ensemble Clément Janequin, Ensemble Organum & Marcel Pérès | 1 | 2 |
| 1986 | Missa Pange lingua / Missa La sol fa re mi / Plainchant: Pange lingua | Josquin; The Tallis Scholars, Peter Phillips | | 3 |
| 1986 | Stabat Mater / Motets | Josquin Desprez; La Chapelle Royale, Philippe Herreweghe | | 2 |
| 1987 | Motets & Chansons | Josquin Desprez; The Hilliard Ensemble | 5 | 2 |
| 1988 | Adieu, mes amours - Chansons | Ensemble Clément Janequin; Josquin Desprez | | 2 |
| 1988 | Messe "Pange lingua" | Josquin des Prez; Ensemble Métamorphoses de Paris, Maurice Bourbon | | 1 |
| 1989 | L’homme armé Masses | Josquin des Prez; The Tallis Scholars, Peter Phillips | | 3 |
| 1989 | Missa Di dadi / Missa Faisant regretz | Josquin Desprez; The Medieval Ensemble of London, Peter Davies, Timothy Davies | | 2 |
| 1990 | Missa Gaudeamus & Mariamotetten van Josquin & Ockeghem | Josquin Des Prez; Cappella Pratensis | | 1 |
| 1990 | Missa Hercules Dux Ferrariae - Miserere mei Deus - Pater noster - Tu solus qui facis mirabilia | Josquin des Prez; The Hilliard Ensemble | | 1 |
| 1992 | Missa Pange lingua | Josquin des Prez; Westminster Cathedral Choir, James O’Donnell | | 2 |
| 1992 | Missa Mater Patris / Magnificat and Motets | Josquin, Agricola; Chanticleer | | 1 |
| 1993 | Messe Ave maris stella / Motets à la vierge | Josquin des Prez; A Sei Voci | | 1 |
| 1993 | Missa "Ave maris stella"; Motets & Chansons | Josquin des Prez; Taverner Consort & Choir, Andrew Parrott | | 1 |
| 1994 | de la Rue: Requiem / des Prez: Mass Hercules Dux Ferrariae / Deploration | Pierre de la Rue, Josquin des Prez; New London Chamber Choir, James Wood | | 1 |
| 1995 | The Early Josquin | Josquin; Capella Alamire | | 1 |
| 1995 | De Vlaamse Polyfonie: Josquin Des Prez | Josquin Des Prez – Capella Sancti Michaelis, Currende Consort - Erik Van Nevel | | 1 |
| 1995 | Missa De Beata Virgine - Motets À la Vierge | Josquin Desprez; A Sei Voci | | 1 |
| 1996 | Missa "lesse faire a mi" | Josquin des Prés; Cappella Pratensis, Rebecca Stewart | | 1 |
| 1997 | BBC Music, Volume 5, Number 6: Renaissance Love Songs | Machaut, Josquin, de Rore, Dowland, Loyset Compère, Hayne van Ghizeghem, Francesco da Milano, Sermisy, Narváez, Flecha, Festa, Nicolo Patavino; Catherine Bott, Virelai | | 1 |
| 1997 | Motets / Masses | Desprez, Palestrina; Collegium Musicum Aldovadensis, Gottfried Preinfalk | | 1 |
| 1997 | Missa Gaudeamus. Motets à la Vierge | Josquin des Prez; A Sei Voci, Maîtrise des Pays de la Loire, Bernard Fabre-Garrus | | 1 |
| 1997 | Missa Hercules Dux Ferrariae | Josquin des Prez; A Sei Voci, Maîtrise Notre‐Dame de Paris, Les Sacqueboutiers, Ensemble Labyrinthes, Bernard Fabre-Garrus | | 1 |
| 1998 | Missa L'homme armé | Josquin; Oxford Camerata, Jeremy Summerly | | 1 |
| 1999 | Motets by Victoria and Josquin des Prez | Victoria, Josquin des Prez; Schola Cantorum Copenhagen, Bernhard Lewkovitch | | 1 |
| 1999 | Missa Ave Maris Stella, Vergil-Motetten | Josquin; Dufay Ensemble | | 1 |
| 2000 | Missa Pange Lingua / Motets | Josquin des Prez; A Sei Voci, Bernard Fabre-Garrus | | 1 |
| 2000 | Motets | Josquin des Prez; Orlando Consort | | 1 |
| 2000 | Missa "l'homme armé sexti toni" / Chansons | Josquin des Prez; Ensemble Obsidienne, Emmanuel Bonnardot | | 1 |
| 2001 | Messes de l'Homme Armé | Josquin Desprez; A Sei Voci, Bernard Fabre-Garrus, Maîtrise des Pays de la Loire | | 3 |
| 2001 | Josquin de Prez: Missa Fortuna desperata / Songs. Motets by Isaac / Senfl / Greiter | Josquin des Prez, Isaac, Senfl, Greiter; The Clerks’ Group, Edward Wickham | | 1 |
| 2002 | Missa Malheur me bat / Motets & Chansons / Liber generationis Jesu Christi | Josquin des Prez; The Clerks’ Group, Edward Wickham | | 1 |
| 2004 | Le Jardin des Délices - Chansons de la Renaissance | Josquin des Prez, Guillaume Dufay; Ensemble Obsidienne | | 1 |
| 2004 | Missa "Hercules Dux Ferrariae" | Josquin des Prez; De Labyrintho | | 1 |
| 2005 | Josquin on the Desert | Josquin des Prez; Cappella Sonora | | 1 |
| 2006 | Josquin Desprez - Volume 2 | Josquin des Prez; A Sei Voci | | 1 |
| 2006 | Missa Faisant Regretz / Motetti de Passione … B | Josquin des Prez; The Clerks’ Group, Edward Wickham | | 1 |
| 2008 | Missa Sine nomine / Missa Ad fugam | Josquin; The Tallis Scholars, Peter Phillips | 4 | 1 |
| 2008 | Bellum & Pax | Jacob Obrecht, Josquin des Prez, Pierre de la Rue; Capilla Flamenca, Oltremontano, Psallentes | | 1 |
| 2009 | Masses: Malheur Me Bat, Fortuna Desperata | Josquin des Prez; The Tallis Scholars | | 2 |
| 2009 | Josquin: Missa Mater patris / Missa d’ung aultre amer | Josquin des Prez, vocal ensemble Cappella & Tetsuro Hanai | | 1 |
| 2011 | Missa Ave maris stella / Marian Motets | Josquin Desprez; Weser-Renaissance, Manfred Cordes | | 1 |
| 2011 | Josquin: Missa Hercules dux Ferrariæ / Missa La sol fa re mi | Josquin des Prez, vocal ensemble Cappella & Tetsuro Hanai | | 1 |
| 2011 | Josquin: Missa Pange lingua / Missa N’auray je jamais | Josquin des Prez, vocal ensemble Cappella & Tetsuro Hanai | | 1 |
| 2011 | Les fantaisies de Josquin: The Instrumental Music of Josquin Desprez | Josquin Desprez; Ensemble Leones, Marc Lewon | | 1 |
| 2011 | Masses: De beata virgine / Ave maris stella | Josquin; The Tallis Scholars, Peter Phillips | | 1 |
| 2011 | Missa Pange Lingua | Josquin des Prez; Kammerchor Josquin des Préz | | 1 |
| 2012 | The Earth Resounds | Josquin, Brumel, Lassus; The Sixteen, Harry Christophers, Eamonn Dougan | | 1 |
| 2012 | De Profundis | Josquin Desprez; Weser-Renaissance, Manfred Cordes | | 1 |
| 2012 | Adios Mi Amor - Duets For Vihuelas | Guerrero, Victoria, Valderrábano, des Prez, Morales; Delitiae Musicae | | 1 |
| 2012 | Josquin: Missa Fortuna desperata / Missa Malheur me bat | Josquin des Prez, vocal ensemble Cappella & Tetsuro Hanai | | 1 |
| 2013 | Se congie prens | Josquin des Prez; Ensemble Musica Nova, Lucien Kandel | | 1 |
| 2014 | Missa Ave Maris Stella: Celebrating the Annunciation in Renaissance Rome | Josquin des Prez; Cappella Pratensis, Stratton Bull | | 1 |
| 2015 | Musique à la chapelle Sixtine autour de 1490 | De Orto / Josquin; Cut Circle, Jesse Rodin | | 1 |
| 2015 | Josquin: Missa De beata virgine / Missa Ave maris stella | Josquin des Prez, vocal ensemble Cappella & Tetsuro Hanai | | 1 |
| 2016 | Messes Pange Lingua & de Beata Virgine | Josquin des Prez; Métamorphoses, Biscantor ! | | 1 |
| 2016 | Missa Di dadi; Missa Une mousse de Biscaye | Josquin des Prez; The Tallis Scholars | | 1 |
| 2017 | Secret History | Josquin des Prez, Tomás Luis de Victoria; John Potter | | 1 |
| 2017 | Josquin: Missa L’ami Baudichon / Missa Une mousse de Biscaye | Josquin des Prez, vocal ensemble Cappella & Tetsuro Hanai | | 1 |
| 2018 | Solitude | Mendelssohn, Weinberg, Shostakovich, Josquin des Prez, Carlo Gesualdo; Dudok Kwartet Amsterdam | | 2 |
| 2018 | Miserere mei Deus: Sacred Motets | Josquin des Prez; Cappella Amsterdam, Daniel Reuss | | 2 |
| 2018 | Josquin Masses: Gaudeamus, L'ami Baudichon | Josquin des Prez; The Tallis Scholars, Peter Phillips | | 1 |
| 2019 | Adieu mes amours | Josquin des Prez; Dulces Exuviae, Romain Bockler, Bor Zuljan | | 1 |
| 2019 | Josquin: Missa Mater Patris / Bauldeweyn: Missa Da pacem | Josquin, Bauldeweyn; The Tallis Scholars, Peter Phillips | | 2 |
| 2019 | Josquin: Missa L’homme armé | Josquin des Prez, vocal ensemble Cappella & Tetsuro Hanai | | 1 |
| 2020 | Inviolata | Josquin des Prez; Jacob Heringman | | 1 |
| 2020 | Masses: Hercules Dux Ferrarie · D'ung aultre amer · Faysant regretz | Josquin; The Tallis Scholars, Peter Phillips | | 2 |
| 2020 | Le septiesme livre de chansons | Josquin des Prez; Ensemble Clément Janequin, Dominique Visse | | 1 |
| 2021 | Motets & Mass Movements | Josquin; The Brabant Ensemble, Stephen Rice | | 1 |
| 2021 | The Golden Renaissance: Josquin des Prez | Josquin des Prez; Stile Antico | | 2 |
| 2021 | Giosquino: Josquin Desprez in Italia | Josquin des Prez; Odhecaton, Paolo Da Col, The Gesualdo Six | | 1 |
| 2021 | Josquin Desprez: Baisiez moy | thélème, Josquin des Prez & Jean-Christophe Groffe | | 1 |
| 2021 | Josquin’s Legacy | Josquin; The Gesualdo Six, Owain Park | | 2 |
| 2021 | The Josquin Songbook: Music for Two Voices and Vihuela | Josquin; María Cristina Kiehr, Jonatan Alvarado, Ariel Abramovich | | 1 |
| 2021 | Josquin, the Undead: Laments, Deplorations and Dances of Death | Josquin Desprez; Graindelavoix / Björn Schmelzer | | 1 |
| 2021 | Josquin: Missa Ad fugam | Josquin des Prez, vocal ensemble Cappella & Tetsuro Hanai | | 1 |
| 2023 | Malheur me bat | Josquin Desprez; Gli Angeli Genève, Stephan MacLeod | | 1 |
| 2023 | Josquin : I. Motets & chansons | Josquin des Prez; Cut Circle | | 1 |
| 2024 | Resonance | Ludwig van Beethoven, George Benjamin, John Dowland,Josquin des Prez; Benjamin Hochman | | 1 |
| 2025 | Maria – Josquin in Leipzig | Josquin des Prez; amarcord | | 1 |
| — | Josquin Desprez: Chansons | Josquin des Prez, Dominique Visse & Ensemble Clément Janequin | | 1 |
| — | Missa "La sol fa re mi" & Motetten | Josquin des Prez; Capella Antiqua München, Konrad Ruhland | | 1 |
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