| 1969 | Oboensonaten | Bach, Händel, Antonio Vivaldi; Heinz Holliger | | 2 |
| 1970 | The spectacular Heinz Holliger plays music by Berio, Castiglioni, Holliger, Huber, Krenek, Lehmann | Heinz Holliger | | 1 |
| 1971 | Oboe Concertos | Wolfgang Amadeus Mozart, Richard Strauss; Heinz Holliger, New Philharmonia Orchestra, Edo de Waart | | 1 |
| 1981 | 4 Concerti, op. 9 | Tomaso Albinoni; I Musici, Heinz Holliger | | 1 |
| 1981 | Concerti per oboe | Telemann; Heinz Holliger, Academy of St Martin in the Fields, Iona Brown | | 2 |
| 1982 | Oboe Concertos | Ludwig August Lebrun; Heinz Holliger, Camerata Bern, Thomas Füri | | 3 |
| 1983 | 3 Oboe Concertos | Academy of St Martin in the Fields, Iona Brown, Heinz Holliger | | 1 |
| 1983 | Brandenburg Concertos nos. 1, 2 & 3 | Johann Sebastian Bach; Henryk Szeryng, Heinz Holliger, Carl Pini, Michala Petri, Academy of St Martin in the Fields, Sir Neville Marriner | | 1 |
| 1984 | 5 Concerti Per Oboe / Concerto Per Oboe & Fagotto RV 545 | Vivaldi; I Musici, Heinz Holliger, Klaus Thunemann | | 1 |
| 1984 | Bach: Concerto in C minor, BWV 1060 / Vivaldi: Concerti RV 576 & 582 | Bach, Vivaldi; Gidon Kremer, Heinz Holliger, Academy of St Martin in the Fields | | 1 |
| 1984 | Concerti da camera | Vivaldi; Michala Petri, Heinz Holliger, Felix Ayo, Klaus Thunemann, Pasquale Pellegrino, Christiane Jaccottet, Thomas Demenga, Jonathan Rubin | | 1 |
| 1985 | Oboe Quartet, K. 379 / Divertimento, K. 251 / Adagio, K. 580a | Mozart; Heinz Holliger, Hermann Baumann, Orlando Quartet | | 2 |
| 1986 | Concertos for Flute and Oboe | Salieri, Cimarosa, Stamitz; Aurèle Nicolet, Heinz Holliger, Academy of St Martin in the Fields, Kenneth Sillito | | 1 |
| 1986 | Mozart: Quintet, K. 452 / Beethoven: Quintet, op. 16 | Mozart, Beethoven; Alfred Brendel, Heinz Holliger, Hermann Baumann, Klaus Thunemann, Eduard Brunner | | 3 |
| 1987 | Cello and Oboe Works | Holliger, Bach; Thomas Demenga, Catrin Demenga, Heinz Holliger | | 1 |
| 1987 | Concerti per Oboe - Oboe Concertos | Heinz Holliger - I Musici; Tomaso Albinoni; Domenico Cimarosa; Alessandro Marcello; Giuseppe Sammartini; Antonio Lotti | | 1 |
| 1987 | Lutoslawski Conducts Lutoslawski: Cello Concerto / Concerto for Oboe and Harp / Danses Préludes | Lutosławski; Heinrich Schiff, Heinz & Ursula Holliger, Eduard Brunner, Symphonie-Orchester des Bayerischen Rundfunks, Lutosławski | | 1 |
| 1987 | Oboe Concertos | Mozart, Ferlendis; Heinz Holliger, Academy of St. Martin in the Fields, Kenneth Sillito | | 1 |
| 1988 | Concerti per Oboe, op. 7 | Tomaso Albinoni; Heinz Holliger, Hans Elhorst, Camerata Bern | | 2 |
| 1988 | Concerts Royaux | François Couperin ; Thomas Brandis, Heinz Holliger, Aurèle Nicolet, Josef Ulsamer, Christiane Nicolet, Manfred Sax & Christiane Jaccottet | | 1 |
| 1988 | Harfenkonzerte | Louis Spohr, Wolfgang Amadeus Mozart; Christoph Poppen, Ursula Holliger, Aurèle Nicolet, English Chamber Orchestra, Heinz Holliger | | 1 |
| 1988 | Stradivari: Soundtrack From the Film | Georg Philipp Telemann, Henry Purcell, Antonio Vivaldi, Johann Pachelbel, George Frideric Handel, Marco Uccellini, Tomaso Vitali, Anon., Salvatore Accardo,Pina Carmirelli, Franco Tamponi, Alfonso Ghedin, Francesco Strano, Aurèle Nicolet, William Bennett, Michala Petri, Heinz Holliger, Klaus Thunemann, Hermann Baumann, Timothy Brown, Celin Romero, Andrea Damian, Rinaldo Alessandrini, I Musici, English Chamber Orchestra, Raymond Leppard, Academy of St Martin-in-the-Fields, Iona Brown, Sir Neville Marriner, Saint Paul Chamber Orchestra, Layton James, Pinchas Zukerman & Orchestra Unione Musicisti Romani | | 1 |
| 1988 | Wind Serenades K.375 & K.388 | Mozart; Holliger, Pellerin, Brunner, Schmidt, Thunemann, Wilkie, Baumann, Vlatkovic | | 1 |
| 1989 | Baroque Oboe Concertos | Leclair, Marcello, Telemann, Vivaldi;Heinz Holliger, Staatskapelle Dresden, Vittorio Negri | | 1 |
| 1989 | Les Goûts-Réunis Ou Nouveaux Concerts | François Couperin; Brandis, Holliger, Nicolet, Ulsamer, Strehl, Sax, Jaccottet | | 2 |
| 1989 | Oboe Sonatas | Vivaldi, Telemann, Handel, C.P.E. Bach; Heinz Holliger, Christiane Jaccottet, Thomas Demenga | | 1 |
| 1989 | The Trio Sonatas | Johann Sebastian Bach; Heinz Holliger, Tabea Zimmermann, Christiane Jaccottet, Thomas Demenga | | 1 |
| 1990 | Heinz Holliger at the Opera | Heinz Holliger | | 1 |
| 1990 | Melodien / Double Concerto / Chamber Concerto | Ligeti; Nicolet, Holliger, London Sinfonietta, David Atherton | 5 | 1 |
| 1990 | Orchestral Suites / 2 Double Concertos | Bach; Holliger, Kremer, Szeryng, Hasson, Academy of St Martin in the Fields, Sir Neville Marriner | | 1 |
| 1990 | Serenade KV 320 "Posthorn" / 2 Marches KV 335 | Mozart; Camerata Academica, Nicolet, Holliger, Thunemann, Sándor Végh | | 1 |
| 1990 | Violinkonzerte & Doppelkonzerte | Johann Sebastian Bach; Academy of St Martin in the Fields, Gidon Kremer, Heinz Holliger | | 1 |
| 1990 | Works for Oboe and Piano | Schumann; Heinz Holliger, Alfred Brendel | | 1 |
| 1991 | 12 Concerti, op. 7 | Antonio Vivaldi; I Musici, Salvatore Accardo, Heinz Holliger | | 1 |
| 1992 | 12 Concerti, op. 7 / 2 Sonatas, op. 2 | Albinoni; I Musici, Heinz Holliger, Maurice Bourgue | | 3 |
| 1992 | Violin Concertos | Berg, Janáček, Hartmann; Thomas Zehetmair, Philharmonia Orchestra, Deutsche Kammerphilharmonie, Holliger | | 2 |
| 1993 | Concertos BWV 1041, 1042, 1043, 1060 | J.S. Bach; Gidon Kremer, Heinz Holliger | | 1 |
| 1993 | Scardanelli-Zyklus | Heinz Holliger | | 1 |
| 1994 | The Oboe Concertos | Maderna; Heinz Holliger, Cologne Radio Symphony Orchestra, Gary Bertini | | 1 |
| 1994 | Verklärte Nacht / Kammersymphonie Nr. 2 | Arnold Schönberg; Chamber Orchestra of Europe, Heinz Holliger | | 1 |
| 1994 | Die frühe Wiener Schule | Thomas Demenga, Thomas Füri, Heinz Holliger, Camerata Bern | | 2 |
| 1994 | Metamorphoses | Britten, Mozart; Heinz Holliger | | 1 |
| 1995 | Passacaglia concertante / Songs of the Seasons / Musica concertante | Sándor Veress; Camerata Bern, London Voices, Heinz Holliger | | 1 |
| 1995 | Beiseit / Alb-Chehr | Heinz Holliger | | 1 |
| 1995 | Piano Recital | Boulez, Holliger, Berio, Bozay, Soproni, Messiaen; Klára Körmendi | | 1 |
| 1995 | Symphony for Wind Instruments / Suite for 13 Winds, Op. 4 / Serenade, Op. 7 | Richard Strauss; Wind Soloists of the Chamber Orchestra of Europe, Heinz Holliger | | 1 |
| 1995 | Triosonaten | Heinz Holliger, Christiane Jaccottet, 長島義夫, Maurice Bourgue & Klaus Thunemann | | 1 |
| 1996 | The Henze Collection, Doppio concerto / Sonata per Archi / Fantasia für Streicher | Henze; Heinz Holliger, Ursula Holliger, Paul Sacher | | 1 |
| 1997 | Lieder ohne Worte | Heinz Holliger; Thomas Zehetmair, Thomas Larcher, Ursula Holliger | | 1 |
| 1997 | Messiaen: Les Offrandes oubliées / Concert à quatre / Koechlin: Les Bandar-log / Ravel: Boléro | Messiaen, Koechlin, Ravel; Bundesjugendorchester, Heinz Holliger | | 1 |
| 1998 | Berg: Kammerkonzert / Schoenberg: Kammersymphonie | Berg, Schönberg; Thomas Zehetmair, Oleg Maisenberg, Chamber Orchestra of Europe, Heinz Holliger | | 1 |
| 1998 | Bach Oboe Concertos | JS Bach, CPE Bach; Heinz Holliger | | 1 |
| 2000 | Schneewittchen | Heinz Holliger | | 1 |
| 2001 | The British Music Collection: Benjamin Britten: The Rarities | Benjamin Britten; Norma Procter, Peter Pears, Dietrich Fischer‐Dieskau, Owen Brannigan, Mtislav Rostropovich, András Schiff, Jennifer Vyvyan, Helen Watts, Osian Ellis, Galina Vishnevskaya, Heinz Holliger, Benjamin Britten, George Malcolm, London Symphony Orchestra & Chorus | | 2 |
| 2002 | Chamber Symphonies no. 1 & no. 2 / Verklärte Nacht | Schoenberg; Chamber Orchestra of Europe, Heinz Holliger | 5 | 1 |
| 2002 | La course de printemps, op. 95 / Le buisson ardent, op. 203 & 171 | Charles Koechlin; Radio‐Sinfonieorchester Stuttgart des SWR, Heinz Holliger | | 1 |
| 2003 | Concerto for Violoncello and Orchestra / Sonata for Oboe, Harp and Viola | Isang Yun; Siegfried Palm, Heinz Holliger, Hans Zender, Berlin Radio Symphony Orchestra | | 1 |
| 2003 | Lauds and Lamentations: Music of Elliott Carter and Isang Yun | Elliott Carter; Isang Yun, Heinz Holliger, Thomas Zehetmair, Ruth Killius, Thomas Demenga | | 1 |
| 2003 | The Ligeti Project IV: Hamburg Concerto / Double Concerto / Ramifications / Requiem | György Ligeti; Marie Luise Neunecker, Heinz Holliger, Jacques Zoon, Caroline Stein, Margriet van Reisen, London Voices, Terry Edwards, Asko Ensemble, Schönberg Ensemble, Reinbert de Leeuw, Berliner Philharmoniker, Jonathan Nott | | 1 |
| 2004 | Violinkonzert | Heinz Holliger; Thomas Zehetmair, SWR Sinfonieorchester | | 1 |
| 2004 | Oboenkonzerte (Oboe Concertos) Graun / Krebs / Telemann | Johann Gottlieb Graun, Johann Ludwig Krebs, Georg Philipp Telemann; Camerata Bern, Heinz Holliger | | 1 |
| 2005 | Vocal Works With Orchestra | Charles Koechlin; Juliane Banse, SWR Vokalensemble Stuttgart, Radio‐Sinfonieorchester Stuttgart des SWR, Heinz Holliger | | 1 |
| 2006 | Les Heures persanes, op. 65 | Charles Koechlin; Radio‐Sinfonieorchester Stuttgart des SWR, Heinz Holliger | | 1 |
| 2008 | Canto di speranza | Bernd Alois Zimmermann; WDR Sinfonieorchester Köln, Heinz Holliger | | 1 |
| 2009 | Romancendres | Heinz Holliger, Clara Schumann | | 1 |
| 2009 | Les Bandar-log, op. 176 / Offrande musicale sur le nom de BACH, op. 187 | Charles Koechlin; Heinz Holliger, Radio‐Sinfonieorchester Stuttgart des SWR | | 1 |
| 2011 | Concertos and Sinfonias for Oboe / Ich hatte viel Bekümmernis | Johann Sebastian Bach; Heinz Holliger, Erich Höbarth, Camerata Bern | | 3 |
| 2011 | Induuchlen | Heinz Holliger; Sylvia Nopper, Kai Wessel, Olivier Darbellay, Matthias Würsch, Swiss Chamber Soloists | | 1 |
| 2011 | Contrechant | Berio, Carter, Eötvös, Holliger, Sciarrino, Vajda; Reto Bieri | | 1 |
| 2011 | Robert Schumann / Heinz Holliger | Robert Schumann, Heinz Holliger; Alexander Lonquich | | 1 |
| 2011 | Symphonies no. 3 »The Scottish« / no. 4 »The Italian« (2nd version) | Felix Mendelssohn Bartholdy; Musikkollegium Winterthur, Heinz Holliger | | 1 |
| 2012 | Magicien Orchestrateur | Charles Koechlin; Debussy; Fauré; Schubert; Chabrier; Heinz Holliger, Radio‐Sinfonieorchester Stuttgart des SWR | | 1 |
| 2013 | Beethoven / Bruckner / Hartmann / Holiger | Ludwig van Beethoven, Anton Bruckner, Karl Amadeus Hartmann, Heinz Holliger; Zehetmair Quartett | | 2 |
| 2013 | Complete Symphonic Works Vol. I | Schumann; WDR Sinfonieorchester Köln, Heinz Holliger | | 1 |
| 2013 | Complete Symphonic Works, Vol. III | Robert Schumann; Oren Shevlin, WDR Sinfonieorchester Köln, Heinz Holliger | | 1 |
| 2013 | Verklärte Nacht, op. 4 / Chamber Symphony no. 2, op. 38 | Schoenberg; Heinz Holliger, Orchestre de Chambre de Lausanne | | 1 |
| 2014 | Aschenmusik | Robert Schumann, Heinz Holliger; Heinz Holliger, Anita Leuzinger, Anton Kernjak | | 1 |
| 2014 | Orchestral Works | Claude Debussy; Dirk Altmann, Daniel Gauthier, Radio-Sinfonieorchester Stuttgart des SWR, Heinz Holliger | | 1 |
| 2014 | Complete Symphonic Works Vol. II | Robert Schumann; Heinz Holliger, WDR Sinfonieorchester Köln | | 1 |
| 2015 | Machaut-Transkriptionen | Heinz Holliger, Guillaume de Machaut; Geneviève Strosser, Jürg Dähler, Muriel Cantoreggi, The Hilliard Ensemble | | 1 |
| 2015 | Complete Symphonic Works, Vol. V | Schumann; WDR Sinfonieorchester Köln, Heinz Holliger, Patricia Kopatchinskaja, Alexander Lonquich | | 1 |
| 2015 | Complete Symphonic Works, Vol. VI | Robert Schumann; WDR Sinfonieorchester Köln, Heinz Holliger | | 1 |
| 2016 | Complete Symphonic Works Vol. IV | Robert Schumann; WDR Sinfonieorchester Köln, Patricia Kopatchinskaja, Dénes Várjon, Heinz Holliger | | 1 |
| 2017 | Modern Lied | Holliger, Kurtág, Lachenmann, Lang, Rihm, Sciarrino; Sarah Maria Sun, Jan Philip Schulze | | 1 |
| 2018 | Symphony No. 8 in C Major, "The Great" | Schubert; Kammerorchester Basel, Heinz Holliger | | 1 |
| 2019 | Zwiegespräche | Heinz Holliger, György Kurtág | | 1 |
| 2019 | Symphonies N° 1 & 5 / Overture "Fierrabras" | Schubert; Kammerorchester Basel, Heinz Holliger | | 1 |
| 2020 | Symphonies N° 2 & 3 | Schubert; Kammerorchester Basel, Heinz Holliger | | 1 |
| 2020 | Symphonies N° 4 & 6 / Overture in the Italian Style | Schubert; Kammerorchester Basel, Heinz Holliger | | 1 |
| 2021 | Schubert: Symphony no. 7 "Unfinished" / Moser: Echoraum zu Franz Schuberts Begräbniß-Feyer | Schubert, Roland Moser; Kammerorchester Basel, Heinz Holliger | | 1 |
| 2021 | Ciaccona | Bach, Gerhard, Holliger, Pauset; Ilya Gringolts | | 1 |
| 2022 | Elegie | Othmar Schoeck; Christian Gerhaher, Kammerorchester Basel, Heinz Holliger | | 1 |
| 2022 | Lunea | Heinz Holliger, Christian Gerhaher | | 1 |
| 2022 | Schönberg: Kammersymphonie, op. 9 / Sechs kleine Stücke, op. 19 / Webern: Symphonie, op. 21 / Fünf Sätze, op. 5 | Schönberg, Webern; Orchestre de Chambre de Lausanne, Heinz Holliger | | 2 |
| 2022 | Recomposed, Vol. 2 | Bernd Alois Zimmermann; Sarah Wegener, Marcus Weiss, Ueli Wiget, WDR Sinfonieorchester, Heinz Holliger | | 1 |
| 2022 | Recomposed, Vol. 3 | Bernd Alois Zimmermann; WDR Sinfonieorchester, Heinz Holliger | | 1 |
| 2022 | Recomposed, Vol. 1 | Bernd Alois Zimmermann; Sarah Wegener, WDR Sinfonieorchester Köln, Heinz Holliger | | 1 |
| 2023 | Violin Concertos nos. 1 & 4 “Concerto Russe” | Édouard Lalo; Dmitry Smirnov, Kammerorchester Basel, Heinz Holliger | | 1 |
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